Supporting genome informatics research using the Australian Research Cloud
New: Command Line Notebook now comes standard with the launched GVL analysis platform (GET GVL). Your instance has Galaxy, iPython Notebook, RStudio and more.
GVL provides Researchers and Developers with a number of resources ....
- Galaxy: perform reproducible analyses via a friendly user interface What is Galaxy?
- Command Line Notebook: perform reproducible analyses with full command line access and a windows interface What is Command Line Notebook?
- Tutorials: learn analysis techniques What are GVL Tutorials?
- CloudMan: manage your cluster on the cloud, dynamically add and remove nodes What is CloudMan?
- UCSC browser: mirror of the UCSC Genome Browser What is UCSC Browser?
...on several platforms: on the NeCTAR Australian Research Cloud
- Personal: Launch your own instance with your default NeCTAR allocation
- Server: Launch your own analysis cluster on your research NeCTAR allocation, tailored to your needs
- Managed: Use the GVL managed resources
GVL Resource Features
|Galaxy||Friendly interface, Reproducible analysis||GVL USE, Server, Personal||♥♥♥♥♥||♥♥|
|Notebook||Reproducible command line analysis||Server, Personal||♥♥♥♥♥||♥♥♥♥♥|
|Tutorials||Learn analysis techniques||GVL LEARN||♥||♥♥♥♥♥|
|CloudMan||Manage your platform||Server, Personal||♥||♥♥♥♥♥||♥♥♥♥♥|
|UCSC||Australian Mirror||GVL BROWSE||♥♥♥♥♥||♥♥♥♥♥||♥♥♥|
GVL Platform Features
|Easy to Set up||Command Line access||Large Datasets||Install Galaxy Tools||Cluster/Virtual Lab|
|Personal: GVL GET||♥♥♥♥||♥♥♥♥♥||♥♥||♥♥♥♥♥|
|Server: GVL GET||♥♥||♥♥♥♥♥||♥♥♥||♥♥♥♥♥||♥♥♥♥♥|
|Managed: GVL USE||♥♥♥♥♥||♥♥♥♥♥|||
|Managed: GVL LEARN||♥♥♥♥♥||♥|
- Personal GVL: 60GB available
- Server GVL: you will need someone to choose set-up options and manage the server
- Server GVL: use as a general purpose cluster
- Use Galaxy for non-Bioinformatics tools Image Analysis and Processing Toolbox, Human Communication Science Virtual Lab
- GVL USE: talk to the GVL Team about installing your own tools
About GVL ResourcesGalaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.
- Accessible: Users without programming experience can easily specify parameters and run tools and workflows.
- Reproducible: Galaxy captures information so that any user can repeat and understand a complete computational analysis.
- Transparent: Users share and publish analyses via the web and create Pages, interactive, web-based documents that describe a complete analysis.
Command Line Notebook is a command line Ubuntu server with
- iPython Notebook, a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document:
- Xfce Desktop Environment, a lightweight desktop environment for UNIX-like operating systems.
- RStudio IDE is a powerful and productive user interface for R.
GVL Tutorials (@GVL LEARN) are a set of self-paced instructions allowing you to learn analysis techniques on our GVL Galaxy Tutorial server. You can further explore analysis techniques by using the GVL Protocol documents.
Register at a GVL Galaxy Managed Services (@GVL USE) and start your analysis
CloudMan allows you to manage many aspects of your analysis cluster, including dynamically adding and removing nodes and administering Galaxy.
UCSC Genome Browser (@GVL BROWSE) allows you to visualise genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.